Index

A

analyze_sample_contributions() (in module sctop), [1] (in module sctop.sctop), [1]

B

BASIS_URLS (in module sctop.sctop)

C

calculate_metrics() (in module sctop) (in module sctop.utils), [1] calculate_per_cell_type_accuracy() (in module sctop) (in module sctop.utils), [1] compute_gene_contributions() (in module sctop) (in module sctop.utils), [1]

compute_predictivity() (in module sctop) (in module sctop.utils), [1] create_basis() (in module sctop), [1] (in module sctop.sctop), [1] create_basis_optimized() (in module sctop.utils), [1] create_colorbar() (in module sctop) (in module sctop.visualization), [1]

F

find_top_contributing_genes() (in module sctop) (in module sctop.utils), [1]

L

list_available_bases() (in module sctop), [1] (in module sctop.sctop), [1]

load_basis() (in module sctop), [1] (in module sctop.sctop), [1]

M

module sctop sctop.processing, [1] sctop.sctop, [1] sctop.utils, [1] sctop.visualization, [1]

P

perform_anova_selection() (in module sctop) (in module sctop.utils), [1] plot_all_contributions() (in module sctop), [1] (in module sctop.visualization), [1] plot_expression_distribution() (in module sctop), [1] (in module sctop.visualization), [1] plot_highest() (in module sctop), [1] (in module sctop.visualization), [1]

plot_performance_summary() (in module sctop) (in module sctop.utils), [1] plot_two() (in module sctop), [1] (in module sctop.visualization), [1] print_metrics() (in module sctop) (in module sctop.utils), [1] process() (in module sctop), [1], [2], [3] (in module sctop.processing), [1]

R

rank_zscore_fast() (in module sctop) (in module sctop.processing), [1]

run_scoring_parallel() (in module sctop) (in module sctop.utils), [1]

S

score() (in module sctop), [1], [2], [3] (in module sctop.processing), [1] score_chunk_optimized() (in module sctop.utils), [1] sctop module sctop.processing module, [1]

sctop.sctop module, [1] sctop.utils module, [1] sctop.visualization module, [1]